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[Seg3D] Re: Seg3D Question

Chronological Thread 
  • From: Ramón Casero Cañas <>
  • To:
  • Subject: [Seg3D] Re: Seg3D Question
  • Date: Sat, 25 Feb 2012 12:20:09 +0000

On Feb 24, 2012, at 2:01 AM, Constantine Zakkaroff wrote:

So, I've used Seg3D to produce some manual segmentations (ground truth for my 
registration experiments) and it seems easy to use. I can see it's a 
well-designed application and I like it very much.

Hi Constantine,

As Ayla says, there's a spline tool available for Seg3D, in a separate branch from trunk

You can click points sequentially, or in any order, and have the tool sort them for you forming a ring.

You can then export the points you clicked to a CSV file, and create a segmentation from the spline.

The problem is that the tool is not merged back into trunk or the new Seg3D2, and at least for me it stopped compiling. Maybe you can try downloading the code and trying to build it, and will be luckier.

Best regards,


Dr. Ramón Casero Cañas

Computational Biology
Department of Computer Science
University of Oxford
Wolfson Building, Parks Rd
Oxford OX1 3QD

tlf     +44 (0) 1865 610737

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