-
Jess Tate
Rob MacLeod
SCI Seg3D Mailing List
Text archives Help
- From: Constantine Zakkaroff <mnkz@leeds.ac.uk>
- To: "seg3d@sci.utah.edu" <seg3d@sci.utah.edu>
- Subject: [Seg3D] Re: Re: Seg3D Question
- Date: Wed, 22 Feb 2012 09:29:29 +0000
Hi Ayla,
Thanks for your response.
Screenshot attached.
Graphics card: NVIDIA Quadro FX 570
Graphics card driver: 7.15.11.8267
Yes, log files report errors of this kind:
[2012-Feb-18 10:30:22|ShaderBase.cc|103] ERROR: Failed to link GLSL program:
Fragment info
-------------
(0) : fatal error C9999: Bad scope in ConvertLocalReferences()
I've attached one log file, because they all look pretty similar.
Is there something I can do to work around this error? I really want to try out Seg3D.
Regards,
Constantine
On 21/02/2012 17:59, Ayla Khan wrote:
Hi Constantine,
Please do send a screenshot. Could you also send your graphics card
and driver information? Finally, please send log files from the
attempts to load data in Seg3D; you will find them in your user
AppData/Local/Seg3D2 directory.
Thanks,
Ayla
On Feb 18, 2012, at 3:10 AM, Constantine Zakkaroff wrote:
Hi Seg3D authors,
I've encountered a problem on Windows Vista x64 with the latest
Seg3D I just downloaded. For some reason any dataset I load
displays in dark blue, no grey-scale values. I've tried loading MRI
datasets from DICOM, MetaImage, Nrrd. I tried loading data from
insight.tgz dataset. Nothing worked in this case. Am I doing
something wrong? I can email you a screenshot.
I've just subscribed to Seg3D mailing list, but I couldn't find
anything relevant. Since we are on the topic of mailing lists, is
there a function to sear all archives?
Regards, Constantine
Attachment:
Seg3DBlue.jpg
Description: JPEG image
[2012-Feb-18 10:30:21|Application.cc|360] MESSAGE: Version: 2.1.3
[2012-Feb-18 10:30:21|Application.cc|361] MESSAGE: 64Bit: true
[2012-Feb-18 10:30:21|ActionInfo.cc|91] MESSAGE: Registering action: <?xml
version="1.0"?>
<action name="Add">Add an item to a vector or set state.</action><key
name="stateid">The stateid of the state</key><key name="value">The value that
needs to be added.</key>
[2012-Feb-18 10:30:21|ActionInfo.cc|91] MESSAGE: Registering action: <?xml
version="1.0"?>
<action name="Clear">Clear the contents of a state vector
variable.</action><key name="stateid">The stateid of the state vector
variable.</key>
[2012-Feb-18 10:30:21|ActionInfo.cc|91] MESSAGE: Registering action: <?xml
version="1.0"?>
<action name="Get">Get the value of a state variable.</action><key
name="stateid">The name of the state variable.</key>
[2012-Feb-18 10:30:21|ActionInfo.cc|91] MESSAGE: Registering action: <?xml
version="1.0"?>
<action name="Offset">Add an offset to a state variable.</action><key
name="stateid">The name of the state variable.</key><key name="value">The
offset that needs to be added.</key>
[2012-Feb-18 10:30:21|ActionInfo.cc|91] MESSAGE: Registering action: <?xml
version="1.0"?>
<action name="Remove">Remove an item from a vector or set state.</action><key
name="stateid">The stateid of the state variable from which the item needs to
be removed</key><key name="value">The value that needs to be removed</key>
[2012-Feb-18 10:30:21|ActionInfo.cc|91] MESSAGE: Registering action: <?xml
version="1.0"?>
<action name="RotateView">This action rotates the camera in a view state
variable.</action><key name="stateid">The name of the state
variable.</key><key name="axis">The axis around which to rotate.</key><key
name="angle">The angle to rotate the view about.</key>
[2012-Feb-18 10:30:21|ActionInfo.cc|91] MESSAGE: Registering action: <?xml
version="1.0"?>
<action name="ScaleView">This action scales the state in a view state
variable.</action><key name="stateid">The name of the state
variable.</key><key name="scale">The scale to multiply the view by.</key>
[2012-Feb-18 10:30:21|ActionInfo.cc|91] MESSAGE: Registering action: <?xml
version="1.0"?>
<action name="Set">This action sets the value of a state
variable.</action><key name="stateid">The name of the state
variable.</key><key name="value">The new value of the state variable.</key>
[2012-Feb-18 10:30:21|ActionInfo.cc|91] MESSAGE: Registering action: <?xml
version="1.0"?>
<action name="SetRange">This action sets the range of a state
variable.</action><key name="stateid">The name of the state
variable.</key><key name="min">The new minimum value of the state
variable.</key><key name="max">The new maximum value of the state
variable.</key>
[2012-Feb-18 10:30:21|ActionInfo.cc|91] MESSAGE: Registering action: <?xml
version="1.0"?>
<action name="Toggle">This action toggles the value of a boolean state
variable.</action><key name="stateid">The name of the state variable.</key>
[2012-Feb-18 10:30:21|ActionInfo.cc|91] MESSAGE: Registering action: <?xml
version="1.0"?>
<action name="TranslateView">This action translates the state in a view state
variable.</action><key name="stateid">The name of the state
variable.</key><key name="offset">The offset that needs to be added.</key>
[2012-Feb-18 10:30:21|ActionInfo.cc|91] MESSAGE: Registering action: <?xml
version="1.0"?>
<action name="SetAt">Set the value at the given position of a vector
state.</action><key name="stateid">The stateid of the vector state</key><key
name="index">The index of the value to be changed</key><key name="value">The
new value.</key>
[2012-Feb-18 10:30:21|ActionInfo.cc|91] MESSAGE: Registering action: <?xml
version="1.0"?>
<action name="Resample">Resample the input layers to the specified
size</action><key name="layerids">The layerids on which this tool needs to be
run.</key><key name="x">Number of samples along X-axis</key><key
name="y">Number of samples along Y-axis</key><key name="z">Number of samples
along Z-axis</key><key name="crop" default="false"> Whether to crop/pad the
dataset.</key><key name="range_min" default="[0,0,0]"> The minimum value of
resample range in index space.</key><key name="range_max" default="[0,0,0]">
The maximum value of resample range in index space.</key><key name="padding"
default="0"> The value used to pad data outside the existing
boundary.</key><key name="kernel" default="box"> Name of the interpolation
kernel to use</key><key name="param1" default="1.0"> The first parameter for
the kernel</key><key name="param2" default="1.0"> The second parameter for
the kernel</key><key name="replace" default="false"> Whether to delete the
input layers when done</key><key name="sandbox" default="-1"> The sandbox in
which to run the action.</key><property
name="sandbox">nonpersistent</property><property>changes_project_data</property><property>is_undoable</property>
[2012-Feb-18 10:30:21|ActionInfo.cc|91] MESSAGE: Registering action: <?xml
version="1.0"?>
<action name="CannyEdgeDetectionFilter">ITK filter that detects where edges
are in a data layer.</action><key name="layerid">The layerid on which this
filter needs to be run.</key><key name="blurring_distance" default="2.0"> The
distance over which the filter blurs before computing the gradient.</key><key
name="threshold" default="1.0"> Below this threshold the values are replaced
with zero.</key><key name="sandbox" default="-1"> The sandbox in which to run
the action.</key><property
name="sandbox">nonpersistent</property><property>changes_project_data</property><property>is_undoable</property>
[2012-Feb-18 10:30:21|ActionInfo.cc|91] MESSAGE: Registering action: <?xml
version="1.0"?>
<action name="ConfidenceConnectedFilter">ITK filter that masks out
statistically connected data.</action><key name="layerid">The layerid on
which this filter needs to be run.</key><key name="seeds">The seed points in
world space.</key><key name="iterations" default="3"> The number of
iterations.</key><key name="multiplier" default="2.5"> The confidence
interval multipiler.</key><key name="sandbox" default="-1"> The sandbox in
which to run the action.</key><property
name="sandbox">nonpersistent</property><property>changes_project_data</property><property>is_undoable</property>
[2012-Feb-18 10:30:21|ActionInfo.cc|91] MESSAGE: Registering action: <?xml
version="1.0"?>
<action name="ConnectedComponentFilter">Segment a mask into connected regions
and keep the regions that connect to seed points or a mask.</action><key
name="layerid">The layerid on which this filter needs to be run.</key><key
name="seeds">The seed points in world space.</key><key name="replace"
default="true"> Replace the old layer (true), or add an new layer
(false).</key><key name="mask" default="<none>"> Select segments connected to
this mask.</key><key name="invert_mask" default="false"> Whether the mask
needs to be inverted.</key><key name="sandbox" default="-1"> The sandbox in
which to run the action.</key><property
name="sandbox">nonpersistent</property><property>changes_project_data</property><property>is_undoable</property>
[2012-Feb-18 10:30:21|ActionInfo.cc|91] MESSAGE: Registering action: <?xml
version="1.0"?>
<action name="ConnectedComponentSizeFilter">Segment a mask into connected
regions and order them by the size of the volume of the
component.</action><key name="layerid">The layerid on which this filter needs
to be run.</key><key name="log_scale" default="false"> Whether the log of the
data should be used.</key><key name="sandbox" default="-1"> The sandbox in
which to run the action.</key><property
name="sandbox">nonpersistent</property><property>changes_project_data</property><property>is_undoable</property>
[2012-Feb-18 10:30:21|ActionInfo.cc|91] MESSAGE: Registering action: <?xml
version="1.0"?>
<action name="CurvatureAnisotropicDiffusionFilter">Run the ITK Curvature
Anisotropic Diffusion Filter.</action><key name="layerid">The layerid on
which this filter needs to be run.</key><key name="preserve_data_format"
default="true"> ITK filters run in floating point percision, this option will
convert the result back into the original format.</key><key name="replace"
default="true"> Replace the old layer (true), or add an new layer
(false)</key><key name="iterations" default="5"> Number of iterations to
perform.</key><key name="sensitivity" default="0.1"> Weight for specifying
how closely connected values are.</key><key name="sandbox" default="-1"> The
sandbox in which to run the action.</key><property
name="sandbox">nonpersistent</property><property>changes_project_data</property><property>is_undoable</property>
[2012-Feb-18 10:30:21|ActionInfo.cc|91] MESSAGE: Registering action: <?xml
version="1.0"?>
<action name="DilateFilter">Filter that dilates a segmentation by a certain
pixel radius.</action><key name="layerid">The layerid on which this filter
needs to be run.</key><key name="replace" default="true"> Replace the old
layer (true), or add an new mask layer (false).</key><key name="radius"
default="1"> The distance over which the filter dilates a mask.</key><key
name="mask" default="<none>"> Only modify data within the mask.</key><key
name="invert_mask" default="false"> Whether the mask needs to be
inverted.</key><key name="only2d" default="false"> Whether the filter only
works 2d.</key><key name="slice_type" default="0"> The slice type for the 2d
filter.</key><key name="sandbox" default="-1"> The sandbox in which to run
the action.</key><property
name="sandbox">nonpersistent</property><property>changes_project_data</property><property>is_undoable</property>
[2012-Feb-18 10:30:21|ActionInfo.cc|91] MESSAGE: Registering action: <?xml
version="1.0"?>
<action name="IterativeDilateFilter">Filter that iteratively dilates a
segmentation by a certain pixel radius.</action><key name="layerid">The
layerid on which this filter needs to be run.</key><key name="replace"
default="true"> Replace the old layer (true), or add an new mask layer
(false).</key><key name="radius" default="1"> The distance over which the
filter dilates a mask.</key><key name="mask" default="<none>"> Only modify
data within the mask.</key><key name="invert_mask" default="false"> Whether
the mask needs to be inverted.</key><key name="only2d" default="false">
Whether the filter only works 2d.</key><key name="slice_type" default="0">
The slice type for the 2d filter.</key><key name="sandbox" default="-1"> The
sandbox in which to run the action.</key><property
name="sandbox">nonpersistent</property><property>changes_project_data</property><property>is_undoable</property>
[2012-Feb-18 10:30:21|ActionInfo.cc|91] MESSAGE: Registering action: <?xml
version="1.0"?>
<action name="SmoothDilateFilter">Filter that dilates a segmentation by a
certain pixel radius.</action><key name="layerid">The layerid on which this
filter needs to be run.</key><key name="replace" default="true"> Replace the
old layer (true), or add an new mask layer (false).</key><key name="radius"
default="1"> The distance over which the filter dilates a mask.</key><key
name="mask" default="<none>"> Only modify data within the mask.</key><key
name="invert_mask" default="false"> Whether the mask needs to be
inverted.</key><key name="only2d" default="false"> Whether the filter only
works 2d.</key><key name="slice_type" default="0"> The slice type for the 2d
filter.</key><key name="sandbox" default="-1"> The sandbox in which to run
the action.</key><property
name="sandbox">nonpersistent</property><property>changes_project_data</property><property>is_undoable</property>
[2012-Feb-18 10:30:21|ActionInfo.cc|91] MESSAGE: Registering action: <?xml
version="1.0"?>
<action name="DilateErodeFilter">Filter that dilates a segmentation by a
certain pixel radius and then erodes them away.</action><key
name="layerid">The layerid on which this filter needs to be run.</key><key
name="replace" default="true"> Replace the old layer (true), or add an new
mask layer (false).</key><key name="dilate_radius" default="1"> The distance
in pixels over which the filter dilates a mask.</key><key name="erode_radius"
default="1"> The distance in pixels over which the filter erodes a
mask.</key><key name="mask" default="<none>"> Only modify data within the
mask.</key><key name="invert_mask" default="false"> Whether the mask needs to
be inverted.</key><key name="only2d" default="false"> Whether the filter only
works 2d.</key><key name="slice_type" default="0"> The slice type for the 2d
filter.</key><key name="sandbox" default="-1"> The sandbox in which to run
the action.</key><property
name="sandbox">nonpersistent</property><property>changes_project_data</property><property>is_undoable</property>
[2012-Feb-18 10:30:21|ActionInfo.cc|91] MESSAGE: Registering action: <?xml
version="1.0"?>
<action name="IterativeDilateErodeFilter">Filter that dilates a segmentation
by a certain pixel radius and then erodes them away.</action><key
name="layerid">The layerid on which this filter needs to be run.</key><key
name="replace" default="true"> Replace the old layer (true), or add an new
mask layer (false).</key><key name="dilate_radius" default="1"> The distance
in pixels over which the filter dilates a mask.</key><key name="erode_radius"
default="1"> The distance in pixels over which the filter erodes a
mask.</key><key name="mask" default="<none>"> Only modify data within the
mask.</key><key name="invert_mask" default="false"> Whether the mask needs to
be inverted.</key><key name="only2d" default="false"> Whether the filter only
works 2d.</key><key name="slice_type" default="0"> The slice type for the 2d
filter.</key><key name="sandbox" default="-1"> The sandbox in which to run
the action.</key><property
name="sandbox">nonpersistent</property><property>changes_project_data</property><property>is_undoable</property>
[2012-Feb-18 10:30:21|ActionInfo.cc|91] MESSAGE: Registering action: <?xml
version="1.0"?>
<action name="SmoothDilateErodeFilter">Filter that dilates a segmentation by
a certain pixel radius and then erodes them away.</action><key
name="layerid">The layerid on which this filter needs to be run.</key><key
name="replace" default="true"> Replace the old layer (true), or add an new
mask layer (false).</key><key name="dilate_radius" default="1"> The distance
in pixels over which the filter dilates a mask.</key><key name="erode_radius"
default="1"> The distance in pixels over which the filter erodes a
mask.</key><key name="mask" default="<none>"> Only modify data within the
mask.</key><key name="invert_mask" default="false"> Whether the mask needs to
be inverted.</key><key name="only2d" default="false"> Whether the filter only
works 2d.</key><key name="slice_type" default="0"> The slice type for the 2d
filter.</key><key name="sandbox" default="-1"> The sandbox in which to run
the action.</key><property
name="sandbox">nonpersistent</property><property>changes_project_data</property><property>is_undoable</property>
[2012-Feb-18 10:30:21|ActionInfo.cc|91] MESSAGE: Registering action: <?xml
version="1.0"?>
<action name="DiscreteGaussianFilter">ITK filter that blurs the
data.</action><key name="layerid">The layerid on which this filter needs to
be run.</key><key name="replace" default="true"> Replace the old layer
(true), or add an new layer (false)</key><key name="preserve_data_format"
default="true"> ITK filters run in floating point percision, this option will
convert the result back into the original format.</key><key
name="blurring_distance" default="2.0"> The amount of blurring.</key><key
name="sandbox" default="-1"> The sandbox in which to run the
action.</key><property
name="sandbox">nonpersistent</property><property>changes_project_data</property><property>is_undoable</property>
[2012-Feb-18 10:30:21|ActionInfo.cc|91] MESSAGE: Registering action: <?xml
version="1.0"?>
<action name="DistanceFilter">Compute the signed distance to a
mask.</action><key name="layerid">The layerid on which this filter needs to
be run.</key><key name="use_index_space" default="false"> Whether to use
index or world coordinates forcomputing the distance.</key><key
name="inside_positive" default="false"> Whether the sign of the inside is
positive and the outside negative or vice versa.</key><key name="sandbox"
default="-1"> The sandbox in which to run the action.</key><property
name="sandbox">nonpersistent</property><property>changes_project_data</property><property>is_undoable</property>
[2012-Feb-18 10:30:21|ActionInfo.cc|91] MESSAGE: Registering action: <?xml
version="1.0"?>
<action name="ErodeFilter">Filter that erodes a segmentation by a certain
pixel radius.</action><key name="layerid">The layerid on which this filter
needs to be run.</key><key name="replace" default="true"> Replace the old
layer (true), or add an new mask layer (false).</key><key name="radius"
default="1"> The distance over which the filter dilates a mask.</key><key
name="mask" default="<none>"> Only modify data within the mask.</key><key
name="invert_mask" default="false"> Whether the mask needs to be
inverted.</key><key name="only2d" default="false"> Whether the filter only
works 2d.</key><key name="slice_type" default="0"> The slice type for the 2d
filter.</key><key name="sandbox" default="-1"> The sandbox in which to run
the action.</key><property
name="sandbox">nonpersistent</property><property>changes_project_data</property><property>is_undoable</property>
[2012-Feb-18 10:30:21|ActionInfo.cc|91] MESSAGE: Registering action: <?xml
version="1.0"?>
<action name="IterativeErodeFilter">Filter that erodes a segmentation by a
certain pixel radius.</action><key name="layerid">The layerid on which this
filter needs to be run.</key><key name="replace" default="true"> Replace the
old layer (true), or add an new mask layer (false).</key><key name="radius"
default="1"> The distance over which the filter dilates a mask.</key><key
name="mask" default="<none>"> Only modify data within the mask.</key><key
name="invert_mask" default="false"> Whether the mask needs to be
inverted.</key><key name="only2d" default="false"> Whether the filter only
works 2d.</key><key name="slice_type" default="0"> The slice type for the 2d
filter.</key><key name="sandbox" default="-1"> The sandbox in which to run
the action.</key><property
name="sandbox">nonpersistent</property><property>changes_project_data</property><property>is_undoable</property>
[2012-Feb-18 10:30:21|ActionInfo.cc|91] MESSAGE: Registering action: <?xml
version="1.0"?>
<action name="SmoothErodeFilter">Filter that erodes a segmentation by a
certain pixel radius.</action><key name="layerid">The layerid on which this
filter needs to be run.</key><key name="replace" default="true"> Replace the
old layer (true), or add an new mask layer (false).</key><key name="radius"
default="1"> The distance over which the filter dilates a mask.</key><key
name="mask" default="<none>"> Only modify data within the mask.</key><key
name="invert_mask" default="false"> Whether the mask needs to be
inverted.</key><key name="only2d" default="false"> Whether the filter only
works 2d.</key><key name="slice_type" default="0"> The slice type for the 2d
filter.</key><key name="sandbox" default="-1"> The sandbox in which to run
the action.</key><property
name="sandbox">nonpersistent</property><property>changes_project_data</property><property>is_undoable</property>
[2012-Feb-18 10:30:21|ActionInfo.cc|91] MESSAGE: Registering action: <?xml
version="1.0"?>
<action name="GradientAnisotropicDiffusionFilter">Run the ITK Gradient
Anisotropic Diffusion Filter.</action><key name="layerid">The layerid on
which this filter needs to be run.</key><key name="preserve_data_format"
default="true"> ITK filters run in floating point percision, this option will
convert the result back into the original format.</key><key name="replace"
default="true"> Replace the old layer (true), or add an new layer
(false)</key><key name="iterations" default="5"> Number of iterations to
perform.</key><key name="sensitivity" default="0.1"> Weight for specifying
how closely connected values are.</key><key name="sandbox" default="-1"> The
sandbox in which to run the action.</key><property
name="sandbox">nonpersistent</property><property>changes_project_data</property><property>is_undoable</property>
[2012-Feb-18 10:30:21|ActionInfo.cc|91] MESSAGE: Registering action: <?xml
version="1.0"?>
<action name="GradientMagnitudeFilter">Extract the magnitude of the local
gradient from a data layer.</action><key name="layerid">The layerid on which
this filter needs to be run.</key><key name="replace" default="true"> Replace
the old layer (true), or add an new layer (false)</key><key
name="preserve_data_format" default="true"> ITK filters run in floating point
percision, this option will convert the result back into the original
format.</key><key name="sandbox" default="-1"> The sandbox in which to run
the action.</key><property
name="sandbox">nonpersistent</property><property>changes_project_data</property><property>is_undoable</property>
[2012-Feb-18 10:30:21|ActionInfo.cc|91] MESSAGE: Registering action: <?xml
version="1.0"?>
<action name="FillHolesFilter">Fill the holes in a mask that are not
indicated by the seed points.</action><key name="layerid">The layerid on
which this filter needs to be run.</key><key name="seeds">The seed points in
world space.</key><key name="replace" default="true"> Replace the old layer
(true), or add an new layer (false).</key><key name="sandbox" default="-1">
The sandbox in which to run the action.</key><property
name="sandbox">nonpersistent</property><property>changes_project_data</property><property>is_undoable</property>
[2012-Feb-18 10:30:21|ActionInfo.cc|91] MESSAGE: Registering action: <?xml
version="1.0"?>
<action name="HistogramEqualizationFilter">Teem filter equalizes the
histogram of the data.</action><key name="layerid">The layerid on which this
filter needs to be run.</key><key name="replace" default="true"> Replace the
old layer (true), or add an new layer (false)</key><key name="amount"
default="1.0"> Amount of equalization (between 0.0 and 1.0).</key><key
name="bins" default="3000"> Number of bins to use for histogram
equalization.</key><key name="ignore" default="1"> Number of bins to ignore
for histogram equalization.</key><key name="sandbox" default="-1"> The
sandbox in which to run the action.</key><property
name="sandbox">nonpersistent</property><property>changes_project_data</property><property>is_undoable</property>
[2012-Feb-18 10:30:21|ActionInfo.cc|91] MESSAGE: Registering action: <?xml
version="1.0"?>
<action name="IntensityCorrectionFilter">Correct for small gradients in
intensity, due for instance, an inhomogenous sensitivity of image recording
systems, such as MRI.</action><key name="layerid">The layerid on which this
filter needs to be run.</key><key name="preserve_data_format" default="true">
ITK filters run in floating point percision, this option will convert the
result back into the original format.</key><key name="replace"
default="true"> Replace the old layer (true), or add an new layer
(false).</key><key name="order" default="2"> Polynomial order that
approximates the sensitivity field.</key><key name="edge" default="0.1"> The
sensitivity to edges.</key><key name="sandbox" default="-1"> The sandbox in
which to run the action.</key><property
name="sandbox">nonpersistent</property><property>changes_project_data</property><property>is_undoable</property>
[2012-Feb-18 10:30:21|ActionInfo.cc|91] MESSAGE: Registering action: <?xml
version="1.0"?>
<action name="MaskDataFilter">Filter that selects a portion of the
data.</action><key name="layerid">The layerid on which this filter needs to
be run.</key><key name="mask">The layerid of the mask that needs to be
applied.</key><key name="replace" default="true"> Replace the old layer
(true), or add an new mask layer (false).</key><key name="invert_mask"
default="false"> Whether the mask needs to be inverted.</key><key
name="replace_with" default="zero"> What the not masked region should be
replaced with.</key><key name="sandbox" default="-1"> The sandbox in which to
run the action.</key><property
name="sandbox">nonpersistent</property><property>changes_project_data</property><property>is_undoable</property>
[2012-Feb-18 10:30:21|ActionInfo.cc|91] MESSAGE: Registering action: <?xml
version="1.0"?>
<action name="MedianFilter">ITK filter that calculates the median from a
volume with a certain radius.</action><key name="layerid">The layerid on
which this filter needs to be run.</key><key name="replace" default="true">
Replace the old layer (true), or add an new layer (false)</key><key
name="preserve_data_format" default="true"> ITK filters run in floating point
percision, this option will convert the result back into the original
format.</key><key name="radius" default="2"> The distance over which the
filter computes the median.</key><key name="sandbox" default="-1"> The
sandbox in which to run the action.</key><property
name="sandbox">nonpersistent</property><property>changes_project_data</property><property>is_undoable</property>
[2012-Feb-18 10:30:21|ActionInfo.cc|91] MESSAGE: Registering action: <?xml
version="1.0"?>
<action name="MeanFilter">ITK filter that calculates the mean from a volume
with a certain radius.</action><key name="layerid">The layerid on which this
filter needs to be run.</key><key name="replace" default="true"> Replace the
old layer (true), or add an new layer (false)</key><key
name="preserve_data_format" default="true"> ITK filters run in floating point
percision, this option will convert the result back into the original
format.</key><key name="radius" default="2"> The distance over which the
filter computes the median.</key><key name="sandbox" default="-1"> The
sandbox in which to run the action.</key><property
name="sandbox">nonpersistent</property><property>changes_project_data</property><property>is_undoable</property>
[2012-Feb-18 10:30:21|ActionInfo.cc|91] MESSAGE: Registering action: <?xml
version="1.0"?>
<action name="NeighborhoodConnectedFilter">A filter that masks out pixels
that are connected to the seeds and have values within
threshold.</action><key name="layerid">The layerid on which this filter needs
to be run.</key><key name="seeds">The seed points in world space.</key><key
name="sandbox" default="-1"> The sandbox in which to run the
action.</key><property
name="sandbox">nonpersistent</property><property>changes_project_data</property><property>is_undoable</property>
[2012-Feb-18 10:30:21|ActionInfo.cc|91] MESSAGE: Registering action: <?xml
version="1.0"?>
<action name="OtsuThresholdFilter">Divide the image in different sections
based on the histogram.</action><key name="layerid">The layerid on which this
filter needs to be run.</key><key name="amount" default="2"> The amount of
divisions to divide the image into</key><key name="sandbox" default="-1"> The
sandbox in which to run the action.</key><property
name="sandbox">nonpersistent</property><property>changes_project_data</property><property>is_undoable</property>
[2012-Feb-18 10:30:21|ActionInfo.cc|91] MESSAGE: Registering action: <?xml
version="1.0"?>
<action name="AndFilter">Filter that does a boolean AND on two
mask.</action><key name="layerid">The layerid on which this filter needs to
be run.</key><key name="mask">The layerid of the mask that needs to be
applied.</key><key name="replace" default="true"> Replace the old layer
(true), or add an new mask layer (false).</key><key name="sandbox"
default="-1"> The sandbox in which to run the action.</key><property
name="sandbox">nonpersistent</property><property>changes_project_data</property><property>is_undoable</property>
[2012-Feb-18 10:30:21|ActionInfo.cc|91] MESSAGE: Registering action: <?xml
version="1.0"?>
<action name="RemoveFilter">Filter that does a boolean REMOVE on two
mask.</action><key name="layerid">The layerid on which this filter needs to
be run.</key><key name="mask">The layerid of the mask that needs to be
applied.</key><key name="replace" default="true"> Replace the old layer
(true), or add an new mask layer (false).</key><key name="sandbox"
default="-1"> The sandbox in which to run the action.</key><property
name="sandbox">nonpersistent</property><property>changes_project_data</property><property>is_undoable</property>
[2012-Feb-18 10:30:21|ActionInfo.cc|91] MESSAGE: Registering action: <?xml
version="1.0"?>
<action name="OrFilter">Filter that does a boolean OR on two
mask.</action><key name="layerid">The layerid on which this filter needs to
be run.</key><key name="mask">The layerid of the mask that needs to be
applied.</key><key name="replace" default="true"> Replace the old layer
(true), or add an new mask layer (false).</key><key name="sandbox"
default="-1"> The sandbox in which to run the action.</key><property
name="sandbox">nonpersistent</property><property>changes_project_data</property><property>is_undoable</property>
[2012-Feb-18 10:30:21|ActionInfo.cc|91] MESSAGE: Registering action: <?xml
version="1.0"?>
<action name="XorFilter">Filter that does a boolean XOR on two
mask.</action><key name="layerid">The layerid on which this filter needs to
be run.</key><key name="mask">The layerid of the mask that needs to be
applied.</key><key name="replace" default="true"> Replace the old layer
(true), or add an new mask layer (false).</key><key name="sandbox"
default="-1"> The sandbox in which to run the action.</key><property
name="sandbox">nonpersistent</property><property>changes_project_data</property><property>is_undoable</property>
[2012-Feb-18 10:30:21|ActionInfo.cc|91] MESSAGE: Registering action: <?xml
version="1.0"?>
<action name="ThresholdSegmentationLSFilter">Run the ITK
ThresholdSegmentLevelSet Filter.</action><key name="layerid">The layerid on
which this filter needs to be run.</key><key name="mask">The layerid on which
this filter needs to be run.</key><key name="iterations" default="50"> Number
of iterations to perform.</key><key name="threshold_range" default="2.5">
Range in variance of initially segmented data of what is considered part of
the segmentation target.</key><key name="curvature" default="1.0"> Curvature
weight.</key><key name="propagation" default="1.0"> Propagation
weight.</key><key name="edge" default="0.0"> Edge weight.</key><key
name="sandbox" default="-1"> The sandbox in which to run the
action.</key><property
name="sandbox">nonpersistent</property><property>changes_project_data</property><property>is_undoable</property>
[2012-Feb-18 10:30:21|ActionInfo.cc|91] MESSAGE: Registering action: <?xml
version="1.0"?>
<action name="Threshold">Build a mask layer by thresholding a data
layer.</action><key name="layerid">The ID of the data layer on which to run
the tool.</key><key name="lower_threshold">The minimum value of the threshold
range.</key><key name="upper_threshold">The maximum value of the threshold
range.</key><key name="sandbox" default="-1"> The sandbox in which to run the
action.</key><property
name="sandbox">nonpersistent</property><property>changes_project_data</property><property>is_undoable</property>
[2012-Feb-18 10:30:21|ActionInfo.cc|91] MESSAGE: Registering action: <?xml
version="1.0"?>
<action name="Invert">Invert the values of the data layer</action><key
name="layerid">The layerid on which this tool needs to be run.</key><key
name="replace" default="true"> Replace the old layer (true), or add an new
layer (false)</key><key name="sandbox" default="-1"> The sandbox in which to
run the action.</key><property
name="sandbox">nonpersistent</property><property>changes_project_data</property><property>is_undoable</property>
[2012-Feb-18 10:30:21|ActionInfo.cc|91] MESSAGE: Registering action: <?xml
version="1.0"?>
<action name="Crop">Crop the input layers to the specified
region</action><key name="layerids">The layerids on which this tool needs to
be run.</key><key name="origin">The origin of the crop box</key><key
name="size">The size of the crop box</key><key name="replace"
default="false"> Whether to delete the input layers when done</key><key
name="sandbox" default="-1"> The sandbox in which to run the
action.</key><property
name="sandbox">nonpersistent</property><property>changes_project_data</property><property>is_undoable</property>
[2012-Feb-18 10:30:21|ActionInfo.cc|91] MESSAGE: Registering action: <?xml
version="1.0"?>
<action name="ArithmeticFilter">Apply boolean/arithmetic expressions to input
layers.</action><key name="layerids">The layerids on which this tool needs to
be run.</key><key name="expressions">The expressions</key><key
name="output_type">The type of the output layer</key><key name="replace"
default="false"> Whether to replace the first input layer with the
output</key><key name="preserve_data_format" default="false"> Whether to use
the same data type as the first input layer for the output</key><key
name="sandbox" default="-1"> The sandbox in which to run the
action.</key><property
name="sandbox">nonpersistent</property><property>changes_project_data</property><property>is_undoable</property>
[2012-Feb-18 10:30:21|ActionInfo.cc|91] MESSAGE: Registering action: <?xml
version="1.0"?>
<action name="Permute">Permute the input layers</action><key
name="layerids">The layerids on which this tool needs to be run.</key><key
name="permutation">The permutation array.</key><key name="replace"
default="false"> Whether to delete the input layers afterwards.</key><key
name="sandbox" default="-1"> The sandbox in which to run the
action.</key><property
name="sandbox">nonpersistent</property><property>changes_project_data</property><property>is_undoable</property>
[2012-Feb-18 10:30:21|ActionInfo.cc|91] MESSAGE: Registering action: <?xml
version="1.0"?>
<action name="Transform">Transform the input layers</action><key
name="layerids">The layerids on which this tool needs to be run.</key><key
name="origin">The new origin.</key><key name="spacing">The new
spacing.</key><key name="replace" default="false"> Whether to delete the
input layers afterwards.</key><key name="sandbox" default="-1"> The sandbox
in which to run the action.</key><property
name="sandbox">nonpersistent</property><property>changes_project_data</property><property>is_undoable</property>
[2012-Feb-18 10:30:21|ActionInfo.cc|91] MESSAGE: Registering action: <?xml
version="1.0"?>
<action name="PointSetRegisterFilter">Filter that does a Iterative Closest
Points Registration on two mask.</action><key name="layerid">The layerid on
which this filter needs to be run.</key><key name="mask">The layerid of the
mask that needs to be applied.</key><key name="iterations" default="5">
Number of iterations to perform.</key><key name="transform_state" default="">
The statid of the state variable into which the transformation values will be
written.</key><key name="sandbox" default="-1"> The sandbox in which to run
the action.</key><property
name="sandbox">nonpersistent</property><property>changes_project_data</property><property>is_undoable</property>
[2012-Feb-18 10:30:21|ActionInfo.cc|91] MESSAGE: Registering action: <?xml
version="1.0"?>
<action name="PointSetTransformFilter">Transform Filter that does a Iterative
Closest Points Registration on two masks.</action><key
name="targetlayerid">Target layer id.</key><key name="layerids">The layerids
on which this tool needs to be run.</key><key name="sandbox" default="-1">
The sandbox in which to run the action.</key><property
name="sandbox">nonpersistent</property><property>changes_project_data</property><property>is_undoable</property>
[2012-Feb-18 10:30:21|ActionInfo.cc|91] MESSAGE: Registering action: <?xml
version="1.0"?>
<action name="SpeedlineImageFilter">Extract the magnitude of the local
gradient from a data layer.</action><key name="layerid">The layerid on which
this filter needs to be run.</key><key name="smooth" default="true"> Whether
to smooth the input layer.</key><key name="rescale" default="true"> Whether
to resceale the values of the input layer.</key><key name="sandbox"
default="-1"> The sandbox in which to run the action.</key><property
name="sandbox">nonpersistent</property><property>changes_project_data</property><property>is_undoable</property>
[2012-Feb-18 10:30:21|ActionInfo.cc|91] MESSAGE: Registering action: <?xml
version="1.0"?>
<action name="ActivateLayer">Activate a layer so it becomes the active
target.</action><key name="layerid">The layerid of the layer that needs to be
activated.</key><property>changes_project_data</property>
[2012-Feb-18 10:30:21|ActionInfo.cc|91] MESSAGE: Registering action: <?xml
version="1.0"?>
<action name="ShiftActiveLayer">Activate the neighbor of current active
layer.</action><key name="downward" default="false"> Whether to shift the
active layer downward (true) or upward
(false).</key><property>changes_project_data</property>
[2012-Feb-18 10:30:21|ActionInfo.cc|91] MESSAGE: Registering action: <?xml
version="1.0"?>
<action name="CalculateMaskVolume">Calculate the volume of a mask
layer.</action><key name="mask">The name of the layer that you want to
calculate volume on.</key>
[2012-Feb-18 10:30:21|ActionInfo.cc|91] MESSAGE: Registering action: <?xml
version="1.0"?>
<action name="ComputeIsosurface">Compute isosurface for the selected
layer.</action><key name="layerid">The layerid of the layer for which the
isosurface needs to be computed.</key><key name="quality_factor"
default="1.0"> The quality factor for mask downsampling prior to isosurface
computation.</key><key name="capping" default="false"> Whether isosurfaces
will be capped.</key><key name="show" default="true"> Whether isosurfaces
will automatically made
visible.</key><property>changes_project_data</property>
[2012-Feb-18 10:30:21|ActionInfo.cc|91] MESSAGE: Registering action: <?xml
version="1.0"?>
<action name="DeleteIsosurface">Delete isosurface for the selected
layer.</action><key name="layerid">The layerid of the layer for which the
isosurface should be deleted.</key><property>changes_project_data</property>
[2012-Feb-18 10:30:21|ActionInfo.cc|91] MESSAGE: Registering action: <?xml
version="1.0"?>
<action name="DeleteLayers">Delete selected layers from a group and the group
if it will become empty.</action><key name="layers">A Pipe delimited list of
layers to delete.</key><property>changes_project_data</property>
[2012-Feb-18 10:30:21|ActionInfo.cc|91] MESSAGE: Registering action: <?xml
version="1.0"?>
<action name="MoveGroup">Move a layer group to the position above the
destination group.</action><key name="src_groupid">Group that needs to be
moved.</key><key name="dst_groupid">Group above which the source group needs
to be moved.</key><property>changes_project_data</property>
[2012-Feb-18 10:30:21|ActionInfo.cc|91] MESSAGE: Registering action: <?xml
version="1.0"?>
<action name="MoveLayer">Move a layer to the postion above another
layer.</action><key name="src_layerid">ID of the layer that needs to be
moved.</key><key name="dst_layerid" default=""> ID of the layer above which
the source layer needs to be
moved.</key><property>changes_project_data</property>
[2012-Feb-18 10:30:21|ActionInfo.cc|91] MESSAGE: Registering action: <?xml
version="1.0"?>
<action name="NewMaskLayer">Add a new mask to the top of a
group.</action><key name="groupid">The groupid of the group in which to
insert the new mask.</key><key name="sandbox" default="-1"> The sandbox in
which to run the action.</key><property
name="sandbox">nonpersistent</property><property>changes_project_data</property><property>is_undoable</property>
[2012-Feb-18 10:30:21|ActionInfo.cc|91] MESSAGE: Registering action: <?xml
version="1.0"?>
<action name="DuplicateLayer">Duplicate a layer</action><key
name="layerid">The layerid of the layer that needs to be
duplicated.</key><key name="sandbox" default="-1"> The sandbox in which to
run the action.</key><property
name="sandbox">nonpersistent</property><property>changes_project_data</property><property>is_undoable</property>
[2012-Feb-18 10:30:21|ActionInfo.cc|91] MESSAGE: Registering action: <?xml
version="1.0"?>
<action name="MigrateSandboxLayer">Move a layer out of a
sandbox.</action><key name="layerid">The ID of the sandbox layer.</key><key
name="sandbox">The sandbox ID from which to migrate the layer.</key><key
name="prov_id" default="-1"> The provenance ID to be used for the
layer.</key><property>changes_project_data</property>
[2012-Feb-18 10:30:21|ActionInfo.cc|91] MESSAGE: Registering action: <?xml
version="1.0"?>
<action name="CreateSandbox">Create a sandbox.</action>
[2012-Feb-18 10:30:21|ActionInfo.cc|91] MESSAGE: Registering action: <?xml
version="1.0"?>
<action name="DeleteSandbox">Delete a sandbox.</action><key
name="sandbox">The ID of the sandbox to be deleted.</key>
[2012-Feb-18 10:30:21|ActionInfo.cc|91] MESSAGE: Registering action: <?xml
version="1.0"?>
<action name="RecreateLayer">Recreate a layer with the given provenance
ID.</action><key name="prov_ids">The provenance IDs to be recreated.</key>
[2012-Feb-18 10:30:21|ActionInfo.cc|91] MESSAGE: Registering action: <?xml
version="1.0"?>
<action name="BeginScriptStatusReport">Signal the beginning of a
script.</action><key name="sandbox">The sandbox in which the script is
running.</key><key name="script_name">The name of the script.</key>
[2012-Feb-18 10:30:21|ActionInfo.cc|91] MESSAGE: Registering action: <?xml
version="1.0"?>
<action name="EndScriptStatusReport">Signal the end of a script.</action><key
name="sandbox">The sandbox in which the script is running.</key>
[2012-Feb-18 10:30:21|ActionInfo.cc|91] MESSAGE: Registering action: <?xml
version="1.0"?>
<action name="ReportScriptStatus">Report the progress of a
script.</action><key name="sandbox">The sandbox in which the script is
running.</key><key name="current_step">The name of the current running
step.</key><key name="steps_done">The number of steps that have
finished.</key><key name="total_steps">The number of total steps.</key>
[2012-Feb-18 10:30:21|ActionInfo.cc|91] MESSAGE: Registering action: <?xml
version="1.0"?>
<action name="ExportLayer">This action exports a layer to file.</action><key
name="layer">The name of the data layer to be exported.</key><key
name="file_path">A path, including the name of the file where the layer
should be exported to.</key><key name="exporter" default=""> Optional name
for a specific exporter.</key><key name="extension" default=""> Extension
used for saving file.</key><property>changes_project_data</property>
[2012-Feb-18 10:30:21|ActionInfo.cc|91] MESSAGE: Registering action: <?xml
version="1.0"?>
<action name="ExportSegmentation">This action exports a layer to
file.</action><key name="layers">A '|' delimited list of layers that are to
be exported.</key><key name="file_path">A path, including the name of the
file where the layer should be exported to.</key><key name="mode"
default="data"> The mode to use: data, single_mask, bitplane_mask, or
label_mask.</key><key name="extension" default=".nrrd"> Optional extension
for a specific exporter. (default is .nrrd)</key><key name="exporter"
default=""> Optional name for a specific
exporter.</key><property>changes_project_data</property>
[2012-Feb-18 10:30:21|ActionInfo.cc|91] MESSAGE: Registering action: <?xml
version="1.0"?>
<action name="ImportLayer">This action imports a layer into the layer
manager.</action><key name="filename">The name of the file to load.</key><key
name="importer" default=""> Optional name for a specific importer.</key><key
name="mode" default="data"> The mode to use: data, single_mask,
bitplane_mask, or label_mask.</key><key name="inputfiles_id" default="-1">
Location of the file if it is in the data cache of the project.</key><key
name="sandbox" default="-1"> The sandbox in which to run the
action.</key><property
name="sandbox">nonpersistent</property><property>changes_project_data</property><property>is_undoable</property>
[2012-Feb-18 10:30:21|ActionInfo.cc|91] MESSAGE: Registering action: <?xml
version="1.0"?>
<action name="ImportSeries">This action imports a series into the layer
manager.</action><key name="filenames">The name of the file to
load.</key><key name="importer" default=""> Optional name for a specific
importer.</key><key name="mode" default="data"> The mode to use: data,
single_mask, bitplane_mask, or label_mask.</key><key name="inputfiles_id"
default="-1"> Location of the file if it is in the data cache of the
project.</key><key name="sandbox" default="-1"> The sandbox in which to run
the action.</key><property
name="sandbox">nonpersistent</property><property>changes_project_data</property>
[2012-Feb-18 10:30:21|ActionInfo.cc|91] MESSAGE: Registering action: <?xml
version="1.0"?>
<action name="SavePreferences">Save Seg3D's Preferences.</action>
[2012-Feb-18 10:30:21|ActionInfo.cc|91] MESSAGE: Registering action: <?xml
version="1.0"?>
<action name="AddNote">Add a new note to the project.</action><key
name="note">The content of the note.</key>
[2012-Feb-18 10:30:21|ActionInfo.cc|91] MESSAGE: Registering action: <?xml
version="1.0"?>
<action name="AutoAutoSave">Create a new auto save session if needed.</action>
[2012-Feb-18 10:30:21|ActionInfo.cc|91] MESSAGE: Registering action: <?xml
version="1.0"?>
<action name="DeleteSession">Delete a session.</action><key
name="sessionid">ID of the session to delete.</key>
[2012-Feb-18 10:30:21|ActionInfo.cc|91] MESSAGE: Registering action: <?xml
version="1.0"?>
<action name="ExportProject">Export a project.</action><key
name="sessionid">ID of the exporting session.</key><key name="path">Path to
export the project to.</key><key name="name">Name to export the project
as.</key>
[2012-Feb-18 10:30:21|ActionInfo.cc|91] MESSAGE: Registering action: <?xml
version="1.0"?>
<action name="LoadProject">Load a new project and discard the current
one.</action><key name="project">The project file that needs to be
opened.</key>
[2012-Feb-18 10:30:21|ActionInfo.cc|91] MESSAGE: Registering action: <?xml
version="1.0"?>
<action name="LoadSession">Load a saved session.</action><key
name="sessionid">ID of the session that needs to be loaded.</key>
[2012-Feb-18 10:30:21|ActionInfo.cc|91] MESSAGE: Registering action: <?xml
version="1.0"?>
<action name="NewProject">Create a new project and close the current
one.</action><key name="path">Where to create the new project.</key><key
name="name">The name of the new project.</key>
[2012-Feb-18 10:30:21|ActionInfo.cc|91] MESSAGE: Registering action: <?xml
version="1.0"?>
<action name="ResetChangesMade">Reset whether changes have been made to the
project data.</action>
[2012-Feb-18 10:30:21|ActionInfo.cc|91] MESSAGE: Registering action: <?xml
version="1.0"?>
<action name="SaveProjectAs">Save a project as...</action><key
name="location">Path to save the project to.</key><key name="name">Name to
save the project as.</key><key name="anonymize">Should the project be
anonymized (patient data removed) when saved?</key>
[2012-Feb-18 10:30:21|ActionInfo.cc|91] MESSAGE: Registering action: <?xml
version="1.0"?>
<action name="SaveSession">Save a new session.</action><key
name="session">Name of the new session or blank to use default name.</key>
[2012-Feb-18 10:30:21|ActionInfo.cc|91] MESSAGE: Registering action: <?xml
version="1.0"?>
<action name="SaveToolPreferences">Save Seg3D's Tool Preferences.</action>
[2012-Feb-18 10:30:21|ActionInfo.cc|91] MESSAGE: Registering action: <?xml
version="1.0"?>
<action name="OpenTool">Open a new tool of a certain type.</action><key
name="tooltype">Type of the tool that needs to be
opened.</key><property>changes_project_data</property>
[2012-Feb-18 10:30:21|ActionInfo.cc|91] MESSAGE: Registering action: <?xml
version="1.0"?>
<action name="CloseTool">Close a tool that was opened
previously.</action><key name="toolid">Toolid of the
tool.</key><property>changes_project_data</property>
[2012-Feb-18 10:30:21|ActionInfo.cc|91] MESSAGE: Registering action: <?xml
version="1.0"?>
<action name="ActivateTool">Activate a tool so it becomes the active
tool.</action><key name="toolid">Toolid of the tool that needs to be
activated.</key><property>changes_project_data</property>
[2012-Feb-18 10:30:21|StateEngine.cc|350] MESSAGE: State handler registered
with ID toolfactory
[2012-Feb-18 10:30:21|ActionInfo.cc|91] MESSAGE: Registering action: <?xml
version="1.0"?>
<action name="Paint">Paint with the specified paint tool.</action><key
name="target">The ID of the target mask layer.</key><key
name="slice_type">The slicing direction to be painted on.</key><key
name="slice_number">The slice number to be painted on.</key><key name="x">X
coordinates of the brush stroke(in index space).</key><key name="y">Y
coordinates of the brush stroke(in index space).</key><key
name="brush_radius">Radius of the paint brush.</key><key
name="data_constraint" default="<none>"> The ID of data constraint
layer.</key><key name="min_value" default="0"> The minimum data constraint
value.</key><key name="max_value" default="0"> The maximum data constraint
value.</key><key name="negative_data_constraint" default="false"> Whether to
negate the data constraint.</key><key name="mask_constraint1"
default="<none>"> The ID of first mask constraint layer.</key><key
name="negative_mask_constraint1" default="false"> Whether to negate the first
mask constraint.</key><key name="mask_constraint2" default="<none>"> The ID
of second mask constraint layer.</key><key name="negative_mask_constraint2"
default="false"> Whether to negate the second mask constraint.</key><key
name="erase" default="false"> Whether to erase instead of painting.</key><key
name="sandbox" default="-1"> The sandbox in which to run the
action.</key><property
name="sandbox">nonpersistent</property><property>changes_project_data</property><property>is_undoable</property>
[2012-Feb-18 10:30:21|ActionInfo.cc|91] MESSAGE: Registering action: <?xml
version="1.0"?>
<action name="Polyline">Fill or erase a slice of a mask layer within the
region enclosed by the polyline.</action><key name="target">The ID of the
target mask layer.</key><key name="slice_type">The slicing direction to be
painted on.</key><key name="slice_number">The slice number to be painted
on.</key><key name="erase">Whether to erase.</key><key name="vertices">The 2D
coordinates of polyline vertices.</key><key name="sandbox" default="-1"> The
sandbox in which to run the action.</key><property
name="sandbox">nonpersistent</property><property>changes_project_data</property><property>is_undoable</property>
[2012-Feb-18 10:30:21|ActionInfo.cc|91] MESSAGE: Registering action: <?xml
version="1.0"?>
<action name="Copy">Copy the content of a mask slice and save it in the
clipboard.</action><key name="target">The ID of the target mask
layer.</key><key name="slice_type">The slicing direction.</key><key
name="slice_number">The slice number to be copied.</key><key name="sandbox"
default="-1"> Which clipboard sandbox to use.</key><property
name="sandbox">nonpersistent</property><property>is_undoable</property>
[2012-Feb-18 10:30:21|ActionInfo.cc|91] MESSAGE: Registering action: <?xml
version="1.0"?>
<action name="Paste">Paste the content of the clipboard onto a mask
slice.</action><key name="target">The ID of the target mask layer.</key><key
name="slice_type">The slicing direction.</key><key name="min_slice">The
minimum slice number to paste onto.</key><key name="max_slice">The maximum
slice number to paste onto.</key><key name="sandbox" default="-1"> Which
sandbox to use.</key><property
name="sandbox">nonpersistent</property><property>changes_project_data</property><property>is_undoable</property>
[2012-Feb-18 10:30:21|ActionInfo.cc|91] MESSAGE: Registering action: <?xml
version="1.0"?>
<action name="FloodFill">Flood fill the content of a mask slice starting from
seed points.</action><key name="target">The ID of the target mask
layer.</key><key name="slice_type">The slicing direction.</key><key
name="slice_number">The slice number to be filled.</key><key
name="seed_points">The world coordinates of seed points.</key><key
name="data_constraint" default="<none>"> The ID of data constraint
layer.</key><key name="min_value" default="0"> The minimum data constraint
value.</key><key name="max_value" default="0"> The maximum data constraint
value.</key><key name="negative_data_constraint" default="false"> Whether to
negate the data constraint.</key><key name="mask_constraint1"
default="<none>"> The ID of first mask constraint layer.</key><key
name="negative_mask_constraint1" default="false"> Whether to negate the first
mask constraint.</key><key name="mask_constraint2" default="<none>"> The ID
of second mask constraint layer.</key><key name="negative_mask_constraint2"
default="false"> Whether to negate the second mask constraint.</key><key
name="erase" default="false"> Whether to erase instead of fill.</key><key
name="sandbox" default="-1"> The sandbox in which to run the
action.</key><property
name="sandbox">nonpersistent</property><property>changes_project_data</property><property>is_undoable</property>
[2012-Feb-18 10:30:21|ActionInfo.cc|91] MESSAGE: Registering action: <?xml
version="1.0"?>
<action name="Speedline">Fill or erase a slice of a mask layer within the
region enclosed by the Speedline.</action><key name="target">The ID of the
target data layer.</key><key name="slice_type">The slicing direction to be
painted on.</key><key name="slice_number">The slice number to be painted
on.</key><key name="vertices">The 2D coordinates of Speedline
vertices.</key><key name="current_vertex_index">The vertex needes to compute
paths.</key><key name="iterations" default="1000"> Number of iterations to
perform.</key><key name="termination" default="1.0"> Unit of
Termination.</key><key name="update_all_path" default="true"> Update all
paths</key><key name="itk_path_state_id" default=""> The statid of the state
variable into which ITK continuous index values will be written.</key><key
name="world_path_state_id" default=""> The statid of the state variable into
which world coordinate path values will be written.</key><key
name="path_vertices_state_id" default=""> The stateid of the state variable
into which vertices values will be
written.</key><property>changes_project_data</property>
[2012-Feb-18 10:30:21|ActionInfo.cc|91] MESSAGE: Registering action: <?xml
version="1.0"?>
<action name="AutoView">Set camera of viewer to a reasonable
default.</action><key name="viewerid">The viewerid of the viewer that needs
auto view.</key><property>changes_project_data</property>
[2012-Feb-18 10:30:21|ActionInfo.cc|91] MESSAGE: Registering action: <?xml
version="1.0"?>
<action name="OffsetSlice">Move the current slice to new
location.</action><key name="viewerid">The viewerid of the viewer that needs
a new location.</key><key name="offset">The offset by which to move the
current slice.</key><property>changes_project_data</property>
[2012-Feb-18 10:30:21|ActionInfo.cc|91] MESSAGE: Registering action: <?xml
version="1.0"?>
<action name="Snap">Snap the camera to the closest axis.</action><key
name="viewerid">The ID of the viewer to run this action
on.</key><property>changes_project_data</property>
[2012-Feb-18 10:30:21|ActionInfo.cc|91] MESSAGE: Registering action: <?xml
version="1.0"?>
<action name="Pick">Pick a new point to align slices with.</action><key
name="point">The new pick
point.</key><property>changes_project_data</property>
[2012-Feb-18 10:30:21|ActionInfo.cc|91] MESSAGE: Registering action: <?xml
version="1.0"?>
<action name="NewFeature">Create a new transfer function
feature.</action><property>changes_project_data</property>
[2012-Feb-18 10:30:21|ActionInfo.cc|91] MESSAGE: Registering action: <?xml
version="1.0"?>
<action name="DeleteFeature">Delete a transfer function feature.</action><key
name="feature_id">The string ID of the feature to be
deleted.</key><property>changes_project_data</property>
[2012-Feb-18 10:30:21|ActionInfo.cc|91] MESSAGE: Registering action: <?xml
version="1.0"?>
<action name="Redo">Redo a layer
action.</action><property>changes_project_data</property>
[2012-Feb-18 10:30:21|ActionInfo.cc|91] MESSAGE: Registering action: <?xml
version="1.0"?>
<action name="Undo">Undo a layer
action.</action><property>changes_project_data</property>
[2012-Feb-18 10:30:22|RenderResources.cc|208] MESSAGE: Video Memory Size:
256MB.
[2012-Feb-18 10:30:22|StateEngine.cc|350] MESSAGE: State handler registered
with ID view
[2012-Feb-18 10:30:22|StateEngine.cc|350] MESSAGE: State handler registered
with ID tf_0
[2012-Feb-18 10:30:22|StateEngine.cc|350] MESSAGE: State handler registered
with ID preferences
[2012-Feb-18 10:30:22|StateEngine.cc|350] MESSAGE: State handler registered
with ID layermanager
[2012-Feb-18 10:30:22|StateEngine.cc|350] MESSAGE: State handler registered
with ID viewer0
[2012-Feb-18 10:30:22|StateEngine.cc|350] MESSAGE: State handler registered
with ID viewer1
[2012-Feb-18 10:30:22|StateEngine.cc|350] MESSAGE: State handler registered
with ID viewer2
[2012-Feb-18 10:30:22|StateEngine.cc|350] MESSAGE: State handler registered
with ID viewer3
[2012-Feb-18 10:30:22|StateEngine.cc|350] MESSAGE: State handler registered
with ID viewer4
[2012-Feb-18 10:30:22|StateEngine.cc|350] MESSAGE: State handler registered
with ID viewer5
[2012-Feb-18 10:30:22|ShaderBase.cc|103] ERROR: Failed to link GLSL program:
Fragment info
-------------
(0) : fatal error C9999: Bad scope in ConvertLocalReferences()
[2012-Feb-18 10:30:22|ShaderBase.cc|103] ERROR: Failed to link GLSL program:
Fragment info
-------------
(0) : fatal error C9999: Bad scope in ConvertLocalReferences()
[2012-Feb-18 10:30:23|ShaderBase.cc|103] ERROR: Failed to link GLSL program:
Fragment info
-------------
(0) : fatal error C9999: Bad scope in ConvertLocalReferences()
[2012-Feb-18 10:30:23|ShaderBase.cc|103] ERROR: Failed to link GLSL program:
Fragment info
-------------
(0) : fatal error C9999: Bad scope in ConvertLocalReferences()
[2012-Feb-18 10:30:23|ShaderBase.cc|103] ERROR: Failed to link GLSL program:
Fragment info
-------------
(0) : fatal error C9999: Bad scope in ConvertLocalReferences()
[2012-Feb-18 10:30:24|ShaderBase.cc|103] ERROR: Failed to link GLSL program:
Fragment info
-------------
(0) : fatal error C9999: Bad scope in ConvertLocalReferences()
[2012-Feb-18 10:30:24|StateEngine.cc|350] MESSAGE: State handler registered
with ID interface
[2012-Feb-18 10:30:24|StateEngine.cc|350] MESSAGE: State handler registered
with ID projectmanager
[2012-Feb-18 10:30:24|StateEngine.cc|350] MESSAGE: State handler registered
with ID project_0
[2012-Feb-18 10:30:24|StateEngine.cc|350] MESSAGE: State handler registered
with ID toolmanager
[2012-Feb-18 10:30:24|StateEngine.cc|350] MESSAGE: State handler registered
with ID statusbar
[2012-Feb-18 10:30:38|StateEngine.cc|350] MESSAGE: State handler registered
with ID project_1
[2012-Feb-18 10:30:38|ActionNewProject.cc|145] SUCCESS: Successfully created
new project 'New Project 6'.
[2012-Feb-18 10:30:51|StateEngine.cc|350] MESSAGE: State handler registered
with ID layer_0
[2012-Feb-18 10:30:51|LayerManager.cc|285] MESSAGE: Insert New Layer: layer_0
[2012-Feb-18 10:30:51|StateEngine.cc|350] MESSAGE: State handler registered
with ID group_0
[2012-Feb-18 10:31:48|Application.cc|366] MESSAGE: -- Finished --
- [Seg3D] Seg3D Question, Constantine Zakkaroff, 02/18/2012
- [Seg3D] Re: Seg3D Question, Ayla Khan, 02/21/2012
- [Seg3D] Re: Re: Seg3D Question, Constantine Zakkaroff, 02/22/2012
- [Seg3D] Re: Re: Seg3D Question, Constantine Zakkaroff, 02/22/2012
- [Seg3D] Re: Re: Re: Seg3D Question, Ayla Khan, 02/22/2012
- [Seg3D] Re: Re: Re: Re: Seg3D Question, Constantine Zakkaroff, 02/24/2012
- [Seg3D] Re: Re: Re: Re: Re: Seg3D Question, Ayla Khan, 02/24/2012
- [Seg3D] Re: Seg3D Question, Ramón Casero Cañas, 02/25/2012
- [Seg3D] Re: Re: Re: Re: Re: Seg3D Question, Ayla Khan, 02/24/2012
- [Seg3D] Re: Re: Re: Re: Seg3D Question, Constantine Zakkaroff, 02/24/2012
- [Seg3D] Re: Re: Re: Seg3D Question, Ayla Khan, 02/22/2012
- [Seg3D] Re: Seg3D Question, Ayla Khan, 02/21/2012
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