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Hi there

it is becoming really frustratingly to work with these softwares. I tried different versions of Seg3D and none of them worked at all.
I even tried Bioimage, it says that it supports DICOM files but it can not upload my data stack of Dicom files. every time it generates errors like "ERROR: (ImportNrrdFromDicom::join_nrrds) Join Error: [nrrd] nrrdJoin: trouble allocating permutation nrrd"
and the "execute" button does not become available either.

what should I do ?

cheers. Ehsan

David Brayford wrote:

Ehsan,

I experienced a similar problem to the one you are having, which was also a
dual Pentium processor machine. Try disabling one of the processors in the
bios and see if that helps. If so could you email me back as it might be a
bug in the threading and I can flag this up as a possible bug in the windows
version of Seg3D. I am currently building a more current version of Seg3D
for windows, if this works I'll send you the executable file.

David

-----Original Message-----
From: Ehsan Vaghefi [mailto:e.vaghefi@auckland.ac.nz] Sent: Sunday, March 18, 2007 2:24 PM
To: David Brayford
Subject: Re: [SCIRUN-USERS] DICOM

Hi there

It runs and it drop down menus are working when I hover my mouse over them but the links on those menus are "inactive" and nothing seems to work.

I have a PC (windows XP) with 2GB Ram Dual Pentium 3.2 GHz and lots of other stuff.

what seems to be the problem ?

Cheers. Ehsan

David Brayford wrote:

Hi Ehsan,

Does Seg3D just hang & in windows task manager, applications Seg3D status

is

not responding?

What is your PCs hardware configuration?

David

-----Original Message-----
From: owner-scirun-users@sci.utah.edu
[mailto:owner-scirun-users@sci.utah.edu] On Behalf Of Ehsan Vaghefi
Sent: Thursday, March 15, 2007 7:30 PM
To: Jolley, Matthew; scirun-users@sci.utah.edu
Subject: Re: [SCIRUN-USERS] DICOM

Hi there

I tried 3D slicer but it's not that powerful, I have had lots of trouble uploading my images(tiff format)and constructing a mesh. on the other I couldn't install SEG3D on my system. I download the windows SEG3D zip file and unzip it and run it (every thing is OK till this point) but then it starts to blink and it freezes after that, can anybody help me ?

Cheers. Ehsan

Jolley, Matthew wrote:

Hello,
You can likely do this in seg 3D (From SCI), as well as 3D Slicer from

the

SPL.  We utilize both to do our research...

You make the models and then save them as NRRD files which are easily

imported to SCIRun as needed...

http://www.sci.utah.edu/ncrr/wiki/index.php/CIBC:Collab:Triedman
All is open source and free...
http://software.sci.utah.edu/SCIRunDocs/index.php/CIBC:Seg3D
www.slicer.org <http://www.slicer.org> You can build slicer or download prebuilt binaries...
http://www.na-mic.org/Wiki/index.php/Slicer:Slicer_2.6_Building
http://www.na-mic.org/Wiki/index.php/Slicer3:Build_Instructions (Beta)
http://www.na-mic.org/Slicer/Download/Release/

----------------------------------------------------------------------------

------------

Matthew Jolley, MD
Children's Hospital Boston
Matthew.Jolley@cardio.chboston.org

<mailto:Matthew.Jolley@cardio.chboston.org>

Pager 6132

________________________________

From: owner-scirun-users@sci.utah.edu on behalf of Ehsan Vaghefi
Sent: Tue 3/13/2007 22:51
To: scirun-users@sci.utah.edu
Subject: [SCIRUN-USERS] DICOM



Hi people

thanks a million to Darby, my Scirun is working fine now, so here is my
basic question. is there any part in the Scirun that I could import a
dataset of images (tiff,bmp,...) from a CT machine and generate a 3D

model

?

cheers. Ehsan

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== for more details.

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== Please acknowledge use of SCIRun in your papers and reports:

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==   see http://software.sci.utah.edu/scirun-biopse_citation.bib

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===========================================================================

===========================================================================

== The SCIRun Users mailing list: send email to majordomo@sci.utah.edu

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== for more details.

==

== Please acknowledge use of SCIRun in your papers and reports:

==

==   see http://software.sci.utah.edu/scirun-biopse_citation.bib

==
===========================================================================

===========================================================================
== The SCIRun Users mailing list: send email to majordomo@sci.utah.edu   ==
== for more details.                                                     ==
== Please acknowledge use of SCIRun in your papers and reports:          ==
==   see http://software.sci.utah.edu/scirun-biopse_citation.bib         ==
===========================================================================

---

• [SCIRUN-USERS] DICOM, Ehsan Vaghefi, 03/13/2007
  • Message not available
    • Re: [SCIRUN-USERS] DICOM, Ehsan Vaghefi, 03/15/2007
      • Message not available
        • Message not available
          • Message not available
            • Re: [SCIRUN-USERS] DICOM, Ehsan Vaghefi, 03/18/2007
              • RE: [SCIRUN-USERS] DICOM, Jolley, Matthew, 03/19/2007
              • Re: [SCIRUN-USERS] DICOM, Ehsan Vaghefi, 03/19/2007
              • RE: [SCIRUN-USERS] DICOM, Jolley, Matthew, 03/19/2007
  • <Possible follow-up(s)>
  • Fwd: RE: [SCIRUN-USERS] DICOM, David Weinstein, 03/15/2007

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